About Euphorbiaceae Database!
Euphorbiaceae, the seventh largest family of angiosperms, has attracted much attention as an energy plant, with 218 genera and about 6,745 species. We have developed Euphorbiaceae comprehensive genomics database (EupDB), which provides a valuable resource and an important platform for basic and applied research on Euphorbiaceae plants.
The database integrates 13 genomes of 6 species (Euphorbia lathyris, Hevea brasiliensis, Jatropha curcas, Manihot esculenta, Ricinus communis and Vernicia fordii), and collects 1004 paired-end RNA-seq (including different tissues and stress treatment conditions), 708 miRNA sequences, and 19 Euphorbiaceae hot pathway maps.
EupDB provides some common genomics analysis and search tools for user, including BLAST, Jbrowse, GO/KEGG enrichment, expression heat map, miRNA target prediction, variant information related key agronomic traits, LDheatmap, syntenic gene and structure, orthologous groups, PPI network and pathway map, etc.
See Tutorial and Case Study page for more help.
Quick Tools
Find differentially expressed genes
Predict target that you interested
Find DNA methylation positon
Find protein interaction
Look for variation sites
Find related agricultural traits
Identifying homologous blocks genome-wide
Search homologous sequences
Citation
Liu, J., Li, Y., Li, J., Chen, W., Pan, B., Liu, A., Xu, Z. F., Xu, W., & Liu, C. (2024). EupDB: An integrative and comprehensive functional genomics data hub for Euphorbiaceae plants. Plant communications, 5(1), 100683. https://doi.org/10.1016/j.xplc.2023.100683